# SBOM for pynanalogue 0.2.1

> Python bindings for Nanalogue: single-molecule BAM/Mod-BAM analysis

The Python package pynanalogue 0.2.1 ships 10 SBOM files (CycloneDX) inside its wheels, under `.dist-info/sboms/` ([PEP 770](https://peps.python.org/pep-0770/)). Its wheels carry a verified PEP 740 attestation.

- Package URL (PURL): `pkg:pypi/pynanalogue@0.2.1`
- PyPI: https://pypi.org/project/pynanalogue/0.2.1/
- Requires Python: \>=3.11
- Changelog: <https://github.com/DNAReplicationLab/pynanalogue/blob/main/CHANGELOG.md>
- Documentation: <https://www.nanalogue.com>
- Homepage: <https://www.nanalogue.com>
- Issues: <https://github.com/DNAReplicationLab/pynanalogue/issues>
- Repository: <https://github.com/DNAReplicationLab/pynanalogue>

## SBOMs

### pynanalogue-0.2.1-cp311-abi3-macosx\_10\_12\_x86\_64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/b47ecc5e-c1d8-5557-a47e-2c89f622d5c0/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-macosx\_11\_0\_arm64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/5260f626-bd21-52fd-96cc-460bbb6af596/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-manylinux\_2\_17\_aarch64.manylinux2014\_aarch64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/ad382c82-2f98-57f3-b440-57bc776c8e9d/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-manylinux\_2\_17\_x86\_64.manylinux2014\_x86\_64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/60ac4588-a645-539a-9cb8-4de340ce08a8/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-manylinux\_2\_28\_aarch64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/0054707b-51e7-5009-908c-7e4ae71af9df/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-manylinux\_2\_28\_x86\_64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/eb9a089f-c26a-51ac-82a7-71a20f52f1eb/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-manylinux\_2\_34\_aarch64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/703bbb8c-cbf1-5619-94c5-7724f8a19f61/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-manylinux\_2\_34\_x86\_64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/91892539-0df4-5bfb-8489-d1a1435fda6d/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-musllinux\_1\_2\_aarch64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/315e9470-982f-5de1-baa6-109f076295e9/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

### pynanalogue-0.2.1-cp311-abi3-musllinux\_1\_2\_x86\_64.whl

PEP 740 attestation verified (GitHub, DNAReplicationLab/pynanalogue, workflow publish\_to\_pypi.yml).

- [pynanalogue-0.2.1.dist-info/sboms/pynanalogue.cyclonedx.json](https://pypi.sbomify.com/artifact/92b39bfa-ed3d-5f52-8135-a27616386921/download): CycloneDX/1.5, `application/vnd.cyclonedx+json`, valid, 24 known vulnerabilities

## Known vulnerabilities

Components listed in these SBOMs, matched against the [OSV database](https://osv.dev/) as of 2026-11-10.

| Vulnerability | Severity | Component | Fixed in | Summary |
|---|---|---|---|---|
| [RUSTSEC-2026-0176](https://osv.dev/vulnerability/RUSTSEC-2026-0176) | high (8.7) | pyo3 0.27.2 (crates.io) | 0.29.0 | Out-of-bounds read in \`nth\` / \`nth\_back\` for \`PyList\` and \`PyTuple\` iterators |
| [RUSTSEC-2026-0194](https://osv.dev/vulnerability/RUSTSEC-2026-0194) | high (7.5) | quick-xml 0.39.4 (crates.io) | 0.41.0 | Quadratic run time when checking a start tag for duplicate attribute names |
| [RUSTSEC-2026-0195](https://osv.dev/vulnerability/RUSTSEC-2026-0195) | high (7.5) | quick-xml 0.39.4 (crates.io) | 0.41.0 | Unbounded namespace-declaration allocation in \`NsReader\` enables memory-exhaustion denial of service |
| [RUSTSEC-2026-0177](https://osv.dev/vulnerability/RUSTSEC-2026-0177) | medium (6.3) | pyo3 0.27.2 (crates.io) | 0.29.0 | Missing \`Sync\` bound on \`PyCFunction::new\_closure\` closures |
| [GHSA-6g2r-675j-hx59](https://osv.dev/vulnerability/GHSA-6g2r-675j-hx59) | low (2.3) | xxhash-rust 0.8.15 (crates.io) | 0.8.16 | xxhash-rust: Safe xxh3 custom-secret API accepts too-short secret in release |
| [RUSTSEC-2025-0141](https://osv.dev/vulnerability/RUSTSEC-2025-0141) | unknown | bincode 2.0.1 (crates.io) | none listed | Bincode is unmaintained |
| [RUSTSEC-2025-0058](https://osv.dev/vulnerability/RUSTSEC-2025-0058) | unknown | custom\_derive 0.1.7 (crates.io) | none listed | custom\_derive crate is unmaintained |
| [RUSTSEC-2026-0418](https://osv.dev/vulnerability/RUSTSEC-2026-0418) | unknown | libz-sys 1.1.23 (crates.io) | 1.1.31 | libz-sys build script leaks environment variables in the build directory |
| [RUSTSEC-2026-0441](https://osv.dev/vulnerability/RUSTSEC-2026-0441) | unknown | pin-utils 0.1.0 (crates.io) | none listed | \`pin-utils\` is unmaintained |
| [RUSTSEC-2026-0386](https://osv.dev/vulnerability/RUSTSEC-2026-0386) | unknown | tokio 1.49.0 (crates.io) | 1.51.6 | \`AsyncFd::new\` and related constructors violate I/O safety |
| [RUSTSEC-2026-0391](https://osv.dev/vulnerability/RUSTSEC-2026-0391) | unknown | zstd 0.13.3 (crates.io) | 0.13.4 | Data from an abandoned stream leaks into the next stream on a reused context |
| [RUSTSEC-2026-0395](https://osv.dev/vulnerability/RUSTSEC-2026-0395) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Use-after-free with \`CParameter::StableInBuffer\` |
| [RUSTSEC-2026-0396](https://osv.dev/vulnerability/RUSTSEC-2026-0396) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | \`Seekable\` reads a NULL or out-of-bounds seek table |
| [RUSTSEC-2026-0397](https://osv.dev/vulnerability/RUSTSEC-2026-0397) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | \`OutBuffer::around\_pos\` exposes uninitialized memory |
| [RUSTSEC-2026-0398](https://osv.dev/vulnerability/RUSTSEC-2026-0398) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | \`Seekable::decompress\` sets a \`Vec\` length beyond its capacity for offsets past the end |
| [RUSTSEC-2026-0399](https://osv.dev/vulnerability/RUSTSEC-2026-0399) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Use-after-free through \`init\_using\_cdict\` and \`init\_using\_ddict\` |
| [RUSTSEC-2026-0400](https://osv.dev/vulnerability/RUSTSEC-2026-0400) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Use-after-free of a dictionary after a one-shot call on a context with an open stream |
| [RUSTSEC-2026-0401](https://osv.dev/vulnerability/RUSTSEC-2026-0401) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Out-of-bounds read in \`train\_from\_buffer\` when sample sizes overflow |
| [RUSTSEC-2026-0402](https://osv.dev/vulnerability/RUSTSEC-2026-0402) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Heap buffer overflow in \`CCtx::try\_clone\` on a multithreaded context |
| [RUSTSEC-2026-0403](https://osv.dev/vulnerability/RUSTSEC-2026-0403) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Uninitialized memory exposed when streaming decompression of a legacy frame fails |
| [RUSTSEC-2026-0404](https://osv.dev/vulnerability/RUSTSEC-2026-0404) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Double free in \`DCtx::try\_clone\` |
| [RUSTSEC-2026-0405](https://osv.dev/vulnerability/RUSTSEC-2026-0405) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Out-of-bounds read with an out-of-range \`InBuffer::pos\` |
| [RUSTSEC-2026-0406](https://osv.dev/vulnerability/RUSTSEC-2026-0406) | unknown | zstd-safe 7.2.4 (crates.io) | 7.4.0 | Use-after-free when changing a multithreaded context with an unfinished frame |
| [RUSTSEC-2026-0410](https://osv.dev/vulnerability/RUSTSEC-2026-0410) | unknown | zstd-sys 2.0.16+zstd.1.5.7 (crates.io) | 2.1.2 | WebAssembly allocator shim corrupts memory on allocation failure |

## Fetch it over TEA

This SBOM is served over the [Transparency Exchange API](https://github.com/CycloneDX/transparency-exchange-api) (TEA). With the `libtea` client:

```
pip install libtea
python -m libtea https://pypi.sbomify.com pkg:pypi/pynanalogue@0.2.1
```

Machine-readable copy of this page: https://pypi.sbomify.com/package/pynanalogue/0.2.1.json

---
From pypi-tea by sbomify: https://pypi.sbomify.com/package/pynanalogue/0.2.1